Hello,
I had the same problem and I'm not sure if the OP has found a solution yet. For me the texture pack had a bug in the gui. The spots it was showing for the drill, pipes, and scanner card were actually part of the internal inventory. I had to place them on the far left in what looks like empty space. If you remove the IC texture pack and load the game and put those items in the miner then add the textures back in it should show you where to place them. I tried to attach a picture but I'm not sure if it worked.