Whenever tin ores, copper ores, etc. get pumped into iron, electro and/or induction furnaces via buildcraft cobble pipes, it just pumps into the furnace then gets pumped back out without it being smelted while their is coal in it.
Support Request: Buildcraft not working with iron and electro and induction furnaces
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Have you tried feeding the ore/dust in from the top and sucking the result out of the side? Fuel goes in the bottom.