I'm away from my PC right now, is it possible to make ethanol using GT machines?
Not with just Gregtech, no. While the distillery will make Forestry Biomass into Ethanol, the only way to get Forestry Biomass is a Forestry fermenter. I'm not sure I would bother with Ethanol if I didn't have a Forestry tree farm collecting saplings on a regular basis. Collecting saplings by hand is much too labor intensive for what you get.
It's worth noting that Forestry will ferment plantballs as well, and you can make those from carrots or wheat. I'm doing it with my excess carrots, but the output is trivial.
It seems to me that if you're talking really renewable, solar and plant-based energy are you only choices, and if you're going to go with a plant source, you want some auto-harvesting option. Forestry mulifarms are one choice for the auto-harvesting. Thaumcraft is obviously another, though I don't know anything about it. Gregtech / Industrialcraft has no provision for it; the crop-matron only maintains, it doesn't harvest. A vanilla piston setup can auto-harvest pumpkins or melons, but you'd need some sort of collection mechanism.
The extractor won't remove fluids from filled cells. The Fluid Canner will move fluid in to or out of a cell, but won't destroy fluid.