Why does IC2 use its own instead of the normal Minecraft one?
IC2 Crafting Handler
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For charging the Electric Item resulted in the Crafting Process, and for accepting Fluid Containers without Hardcode.
Both can be done by just extending the vanilla (well, actually Forge since the OreDict Support isn't vanilla) Shaped and Shapeless Recipes, so that NEI doesn't need a seperate Plugin for that, so I don't know why they did it back then.
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Probably when forge didnt have those functions, a long time ago?